Journal Articles:
  • Henrick K, Feng Z, Bluhm WF, Dimitropoulos D, Doreleijers JF, Dutta S, Flippen-Anderson JL, Ionides J, Kamada C, Krissinel E, Lawson CL, Markley JL, Nakamura H, Newman R, Shimizu Y, Swaminathan J, Velankar S, Ory J, Ulrich EL, Vranken W, Westbrook J, Yamashita R, Yang H, Young J, Yousufuddin M, Berman HM. Remediation of the protein data bank archive. Nucleic Acids Res. 2007 Dec 11 [link]
  • Burkhardt K, Schneider B, Ory J. A Biocurator Perspective: Annotation at the Research Collaboratory for Structural Bioinformatics Protein Data Bank. PLoS Comput Biol, 2006 2(10): e99. [link]
  • Ory JJ, Griffith CL, Doering TL. An efficiently regulated promoter system for Cryptococcus neoformans utilizing the CTR4 promoter. Yeast, 2004 Aug;21(11):919-926. [link]
  • Terradot L, Durnell N, Li M, Li D, Ory J, Labigne A, Legrain P, Colland F, Waksman G. Biochemical characterization of protein complexes from the Helicobacter pylori protein interaction map: strategies for complex formation and evidence for novel interactions within type IV secretion systems. Mol Cell Proteomics. 2004 Aug;3(8):809-819. [link]
  • Bar-Peled M, Griffith CL, Ory JJ, Doering TL. Purification and kinetic characterization of UDP-glucose dehydrogenase from Cryptococcus neoformans. Biochem. J., 2004 Jul 1;381(Pt 1):131-6. [link]
  • Ory, J. Scientists & Society: Two body problem. Nature. 2004 Jun 17;429(6993):788. [link]
  • Bose I, Reese AJ, Ory JJ, Janbon G, Doering TL. A yeast under cover: The capsule of Cryptococcus neoformans. Eukaryotic Cell 2003 Aug;2(4):655-63. [link]
  • Ory JJ, Banaszak LJ. Studies of the ligand binding reaction of adipocyte lipid binding protein using the fluorescent probe 1-anilinonaphthalene-8-sulfonate. Biophys. J. 1999 Aug;77(2):1107-16. [link]
  • Thompson J, Ory J, Reese-Wagoner A, Banaszak L. The liver fatty acid binding protein -- comparison of cavity properties of intracellular lipid-binding proteins. Mol. Cell, Biochem. 1999 Feb;192(1-2):9-16. [link]
  • Ory JJ, Mazhary A, Kuang H, Davies RR, Distefano MD, Banaszak LJ. Structural characterization of two synthetic catalysts based on adipocyte lipid-binding protein. Protein Eng. 1998 Apr;11(4):253-61. [link]
  • Ory J, Kane CD, Simpson MA, Banaszak LJ, Bernlohr DA. Biochemical and crystallographic analyses of a portal mutant of the adipocyte lipid-binding protein. J. Biol. Chem. 1997 Apr 11;272(15):9793-801. [link]
  • Blum P, Ory J, Bauernfeind J, Krska J. Physiological consequences of DnaK and DnaJ overproduction in Escherichia coli. J. Bacteriol. 1992 Nov;174(22):7436-44. [link]
Conference papers:
  • Ory JJ, Brown RH, Brent MR, Doering TL. Searching for copper regulated genes in C. neoformans using TWINSCAN. August 2003. 3rd International Cryptococcus neoformans Genome Conference. Vancouver, BC.
  • Ory JJ, Griffith CL, Doering TL. Inducible promoter design in Cryptococcus neoformans. May 2003. The 15th Congress of the International Society for Human and Animal Mycology. San Antonio, TX.
  • Ory JJ, Griffith CL, Doering TL. Structure and Functional Analysis of UDP-sugar enzymes in Cryptococcus neoformans. October 2002. 9th Annual Midwest Microbial Pathogenesis Conference. Indianapolis, IN.
  • Ory JJ, Monsey JD, Cistola DP. A Genetic Polymorphism in Human Intestinal Fatty Acid Binding Protein Affects Ligand Release. October 2001. The 15th Annual Gibbs Conference on Biothermodynamics. Carbondale, IL.
  • Ory JJ, Monsey JD, Cistola DP. Characterization of Millisecond Dynamics of Human Intestinal Fatty Acid Binding Protein. January 2001. Keystone Symposium on Frontiers of NMR in Molecular Biology. Big Sky, MT.
  • Distefano MD, Kuang H, Qi D, Haring D, Ory JJ, Banaszak LJ. Semisynthetic Approaches for the Design of Protein with Catalytic Activity Using Fatty Acid Binding Protein as a Scaffold. 16th American Peptide Symposium. July 1999. Minneapolis, MN.
  • Ory JJ, Banaszak LJ. Role of the Portal Region of Adipocyte Lipid Binding Protein in Ligand Binding and Kinetics. July 1998. American Crystallographic Association Annual Meeting, Washington DC.
  • Distefano MD, Qi D, Kuang H, Mazhary A, Ory JJ, Banaszak LJ. Design of Artificial Enzymes Using Protein Cavities as scaffolds. The 216th American Chemical Society (ACS) National Meeting. August 1998. Boston, MA.